1 Response_reg#1
3-84 aa · 82 aa · 82.0% of protein
Raw token
Response_reg:3:2.02e-20:84:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS18920
Response regulator, CheY family
Blautia sp. TM10-2 · GCF_003480845
ClassRRTypeCheYLength100 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003480845#DXD92_RS18920Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length100 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 100 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa100 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:2.02e-20:84:82:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003480845::NZ_QUJZ01000004.1::G00040
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span12893-17903Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003480845::NZ_QUJZ01000004.1::G00040Context members
DXD92_RS18915DXD92_RS18920DXD92_RS04755
Partner locus tags
DXD92_RS18915DXD92_RS18920DXD92_RS04755
Partner old locus tags
DXD92_04755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243104840.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS18920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QUJZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval14 623-14 925 nt303 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 893-17 903 ntGCF_003480845::NZ_QUJZ01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span12 893-17 903 nt5 011 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 893 nt17 903 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD92_RS18915GCF_003480845#DXD92_RS18915
HKClassic
12 893-14 626 nt · Forward (+)
DXD92_RS18920GCF_003480845#DXD92_RS18920
RRCheYCurrent focus
14 623-14 925 nt · Forward (+)
DXD92_RS04755GCF_003480845#DXD92_RS04755
HKHybrid
15 072-17 903 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS18920The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471742
Simplified PFAM architecture for RROC_2471742
PFAM domain coverage: 81 / 100 aa (81.0%)
1 aa100 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-83]
- Domain count: 1
- Matched identifier: RROC_2471742
- Positioned domains: Response_reg 3-83 ; Response_reg 3-83
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS18920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key