1 CHASE#1
98-210 aa · 113 aa · 19.6% of protein
Raw token
CHASE:98:0.0000000192:210:129:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS18915
Histidine kinase, Classic
Blautia sp. TM10-2 · GCF_003480845
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003480845#DXD92_RS18915Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 577 aa (51.8%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 HisKA#2
319-385 aa · 67 aa · 11.6% of protein
Raw token
HisKA:319:3.89e-16:385:67:643 HATPase_c#3
431-549 aa · 119 aa · 20.6% of protein
Raw token
HATPase_c:431:7.5e-29:549:119:109- Raw architecture: CHASE:98:0.0000000192:210:129:183#HisKA:319:3.89e-16:385:67:64#HATPase_c:431:7.5e-29:549:119:109
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003480845::NZ_QUJZ01000004.1::G00040
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span12893-17903Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003480845::NZ_QUJZ01000004.1::G00040Context members
DXD92_RS18915DXD92_RS18920DXD92_RS04755
Partner locus tags
DXD92_RS18915DXD92_RS18920DXD92_RS04755
Partner old locus tags
DXD92_04755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243104839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS18915Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QUJZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval12 893-14 626 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 893-17 903 ntGCF_003480845::NZ_QUJZ01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span12 893-17 903 nt5 011 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 893 nt17 903 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD92_RS18915GCF_003480845#DXD92_RS18915
HKClassicCurrent focus
12 893-14 626 nt · Forward (+)
DXD92_RS18920GCF_003480845#DXD92_RS18920
RRCheY
14 623-14 925 nt · Forward (+)
DXD92_RS04755GCF_003480845#DXD92_RS04755
HKHybrid
15 072-17 903 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS18915The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178482
Simplified PFAM architecture for HKOC_1178482
PFAM domain coverage: 286 / 577 aa (49.6%)
1 aa577 aa
CHASEHisKAHATPase_c
- Simplified architecture: CHASE + HisKA + HATPase_c
- Raw architecture: CHASE[102-204] | HisKA[320-385] | HATPase_c[431-547]
- Domain count: 3
- Matched identifier: HKOC_1178482
- Positioned domains: CHASE 102-204 ; HisKA 320-385 ; HATPase_c 431-547
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS18915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key