1 Response_reg#1
83-149 aa · 67 aa · 43.5% of protein
Raw token
Response_reg:83:0.00000000000000854:149:67:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS15685
Response regulator, unclassified
Blautia sp. TM10-2 · GCF_003480845
ClassRRTypeunclassifiedLength154 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480845#DXD92_RS15685Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length154 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage67 / 154 aa (43.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa154 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:83:0.00000000000000854:149:67:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480845::NZ_QUJZ01000016.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75161-75625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD92_15705RefSeq proteinWP_330427595.1
Context group ID
GCF_003480845::NZ_QUJZ01000016.1::G00021Context members
DXD92_RS15685
Partner locus tags
DXD92_RS15685
Partner old locus tags
DXD92_15705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330427595.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS15685Primary locus identifier stored in the genes table.
Old locus tagDXD92_15705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJZ01000016.1Sequence record reported by the local genomic context database.
Genomic interval75 161-75 625 nt465 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 161-75 625 ntGCF_003480845::NZ_QUJZ01000016.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000016.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span75 161-75 625 nt465 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 161 nt75 625 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD92_RS15685GCF_003480845#DXD92_RS15685
RRunclassifiedCurrent focus
75 161-75 625 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS15685The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2217953
Simplified PFAM architecture for RROC_2217953
PFAM domain coverage: 145 / 154 aa (94.2%)
1 aa154 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[1-79] | Response_reg[83-148]
- Domain count: 2
- Matched identifier: RROC_2217953
- Positioned domains: HATPase_c 1-79 ; HATPase_c 1-79 ; Response_reg 83-148 ; Response_reg 83-148
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS15685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key