1 HAMP#1
185-254 aa · 70 aa · 14.1% of protein
Raw token
HAMP:185:0.0000000000022:254:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS14375
Histidine kinase, Classic
Blautia sp. TM10-2 · GCF_003480845
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480845#DXD92_RS14375Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 497 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.7% of protein
Raw token
HisKA:265:0.00000000000000117:332:68:643 HATPase_c#3
379-492 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:379:1.95e-32:492:114:109- Raw architecture: HAMP:185:0.0000000000022:254:70:69#HisKA:265:0.00000000000000117:332:68:64#HATPase_c:379:1.95e-32:492:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480845::NZ_QUJZ01000014.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28407-30586Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD92_14390RefSeq proteinWP_118640891.1
Context group ID
GCF_003480845::NZ_QUJZ01000014.1::G00015Context members
DXD92_RS14375DXD92_RS14380
Partner locus tags
DXD92_RS14375DXD92_RS14380
Partner old locus tags
DXD92_14390DXD92_14395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118640891.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS14375Primary locus identifier stored in the genes table.
Old locus tagDXD92_14390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJZ01000014.1Sequence record reported by the local genomic context database.
Genomic interval28 407-29 900 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 407-30 586 ntGCF_003480845::NZ_QUJZ01000014.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000014.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000014.1All displayed genes belong to this local TCS context.
Neighborhood span28 407-30 586 nt2 180 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 407 nt30 586 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD92_RS14375GCF_003480845#DXD92_RS14375
HKClassicCurrent focus
28 407-29 900 nt · Forward (+)
DXD92_RS14380GCF_003480845#DXD92_RS14380
RROmpR
29 897-30 586 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS14375The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1494235
Simplified PFAM architecture for HKOC_1494235
PFAM domain coverage: 229 / 497 aa (46.1%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[202-254] | HisKA[267-331] | HATPase_c[380-490]
- Domain count: 3
- Matched identifier: HKOC_1494235
- Positioned domains: HAMP 202-254 ; HisKA 267-331 ; HATPase_c 380-490
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS14375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key