1 dCache_1#1
94-272 aa · 179 aa · 30.1% of protein
Raw token
dCache_1:94:0.00000000172:272:184:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS02790
Histidine kinase, Classic
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS02790Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage428 / 595 aa (71.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
292-360 aa · 69 aa · 11.6% of protein
Raw token
HAMP:292:0.0000202:360:71:693 His_kinase#3
375-449 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:375:2.27e-22:449:75:804 HATPase_c#4
471-575 aa · 105 aa · 17.6% of protein
Raw token
HATPase_c:471:0.0000000000000219:575:108:109- Raw architecture: dCache_1:94:0.00000000172:272:184:195#HAMP:292:0.0000202:360:71:69#His_kinase:375:2.27e-22:449:75:80#HATPase_c:471:0.0000000000000219:575:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span161379-164601Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_02790RefSeq proteinWP_118729027.1
Context group ID
GCF_003480365::NZ_QUIX01000002.1::G00019Context members
DW806_RS02785DW806_RS02790
Partner locus tags
DW806_RS02785DW806_RS02790
Partner old locus tags
DW806_02785DW806_02790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729027.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS02790Primary locus identifier stored in the genes table.
Old locus tagDW806_02790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000002.1Sequence record reported by the local genomic context database.
Genomic interval162 814-164 601 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span161 379-164 601 ntGCF_003480365::NZ_QUIX01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span161 379-164 601 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 379 nt164 601 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS02785GCF_003480365#DW806_RS02785
RRunclassified
161 379-162 833 nt · Reverse (-)
DW806_RS02790GCF_003480365#DW806_RS02790
HKClassicCurrent focus
162 814-164 601 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS02790The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081885
Simplified PFAM architecture for HKOC_1081885
PFAM domain coverage: 182 / 595 aa (30.6%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[376-452] | HATPase_c[471-575]
- Domain count: 2
- Matched identifier: HKOC_1081885
- Positioned domains: His_kinase 376-452 ; HATPase_c 471-575
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS02790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key