1 Response_reg#1
6-115 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:6:1.04e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS02540
Response regulator OmpR family
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS02540Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:147:5.36e-18:221:76:77- Raw architecture: Response_reg:6:1.04e-32:115:111:111#Trans_reg_C:147:5.36e-18:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100619-103217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_02540RefSeq proteinWP_158574639.1
Context group ID
GCF_003480365::NZ_QUIX01000002.1::G00018Context members
DW806_RS02540DW806_RS02545
Partner locus tags
DW806_RS02540DW806_RS02545
Partner old locus tags
DW806_02540DW806_02545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158574639.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS02540Primary locus identifier stored in the genes table.
Old locus tagDW806_02540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000002.1Sequence record reported by the local genomic context database.
Genomic interval100 619-101 293 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 619-103 217 ntGCF_003480365::NZ_QUIX01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span100 619-103 217 nt2 599 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 619 nt103 217 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS02540GCF_003480365#DW806_RS02540
RROmpRCurrent focus
100 619-101 293 nt · Reverse (-)
DW806_RS02545GCF_003480365#DW806_RS02545
HKClassic
101 283-103 217 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS07840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543442
Simplified PFAM architecture for RROC_1543442
PFAM domain coverage: 184 / 224 aa (82.1%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1543442
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key