1 Response_reg#1
3-96 aa · 94 aa · 42.0% of protein
Raw token
Response_reg:3:0.00000000000324:96:98:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW965_RS01960
Response regulator LytTR family
Blautia sp. AM47-4 · GCF_003479865
ClassRRTypeLytTRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479865#DW965_RS01960Stable P2CS identifier used across views.
GenomeGCF_003479865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 LytTR#2
123-212 aa · 90 aa · 40.2% of protein
Raw token
LytTR:123:1.18e-21:212:95:98- Raw architecture: Response_reg:3:0.00000000000324:96:98:111#LytTR:123:1.18e-21:212:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479865::NZ_QUHY01000002.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span117068-117742Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW965_01965RefSeq proteinWP_243036252.1
Context group ID
GCF_003479865::NZ_QUHY01000002.1::G00029Context members
DW965_RS01960
Partner locus tags
DW965_RS01960
Partner old locus tags
DW965_01965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243036252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW965_RS01960Primary locus identifier stored in the genes table.
Old locus tagDW965_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUHY01000002.1Sequence record reported by the local genomic context database.
Genomic interval117 068-117 742 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 068-117 742 ntGCF_003479865::NZ_QUHY01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479865::NZ_QUHY01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUHY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span117 068-117 742 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 068 nt117 742 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW965_RS01960GCF_003479865#DW965_RS01960
RRLytTRCurrent focus
117 068-117 742 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS17375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843820
Simplified PFAM architecture for RROC_0843820
PFAM domain coverage: 201 / 242 aa (83.1%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0843820
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS17375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 979 · GCF_003479865
AssemblyASM347986v1 · Contighaploid
Genome composition3 843 555 bp · 47,0% GCBlautia sp. AM47-4
Signal transduction countsGenes 103 · HK 51 · RR 49CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key