1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:1.05e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW965_RS01890
Response regulator OmpR family
Blautia sp. AM47-4 · GCF_003479865
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479865#DW965_RS01890Stable P2CS identifier used across views.
GenomeGCF_003479865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:3.98e-23:218:76:77- Raw architecture: Response_reg:5:1.05e-28:114:110:111#Trans_reg_C:147:3.98e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479865::NZ_QUHY01000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105462-107031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW965_01895RefSeq proteinWP_117760537.1
Context group ID
GCF_003479865::NZ_QUHY01000002.1::G00028Context members
DW965_RS01890DW965_RS01895
Partner locus tags
DW965_RS01890DW965_RS01895
Partner old locus tags
DW965_01895DW965_01900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117760537.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW965_RS01890Primary locus identifier stored in the genes table.
Old locus tagDW965_01895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUHY01000002.1Sequence record reported by the local genomic context database.
Genomic interval105 462-106 139 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 462-107 031 ntGCF_003479865::NZ_QUHY01000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479865::NZ_QUHY01000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUHY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span105 462-107 031 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 462 nt107 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW965_RS01890GCF_003479865#DW965_RS01890
RROmpRCurrent focus
105 462-106 139 nt · Forward (+)
DW965_RS01895GCF_003479865#DW965_RS01895
HKClassic
106 132-107 031 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462165#DW746_RS03275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479918
Simplified PFAM architecture for RROC_1479918
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1479918
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_003462165#DW746_RS03275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 979 · GCF_003479865
AssemblyASM347986v1 · Contighaploid
Genome composition3 843 555 bp · 47,0% GCBlautia sp. AM47-4
Signal transduction countsGenes 103 · HK 51 · RR 49CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key