1 HisKA#1
649-714 aa · 66 aa · 7.3% of protein
Raw token
HisKA:649:1.63e-16:714:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW13_RS09180
Histidine kinase, Classic
Blautia sp. AF14-40 · GCF_003479665
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479665#DWW13_RS09180Stable P2CS identifier used across views.
GenomeGCF_003479665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 898 aa (19.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
760-868 aa · 109 aa · 12.1% of protein
Raw token
HATPase_c:760:0.0000000000437:868:114:109- Raw architecture: HisKA:649:1.63e-16:714:66:64#HATPase_c:760:0.0000000000437:868:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479665::NZ_QUHK01000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40514-43922Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW13_09175RefSeq proteinWP_226906362.1
Context group ID
GCF_003479665::NZ_QUHK01000010.1::G00006Context members
DWW13_RS09180DWW13_RS09185
Partner locus tags
DWW13_RS09180DWW13_RS09185
Partner old locus tags
DWW13_09175DWW13_09180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226906362.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW13_RS09180Primary locus identifier stored in the genes table.
Old locus tagDWW13_09175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUHK01000010.1Sequence record reported by the local genomic context database.
Genomic interval40 514-43 210 nt2 697 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 514-43 922 ntGCF_003479665::NZ_QUHK01000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479665::NZ_QUHK01000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUHK01000010.1All displayed genes belong to this local TCS context.
Neighborhood span40 514-43 922 nt3 409 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 514 nt43 922 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW13_RS09180GCF_003479665#DWW13_RS09180
HKClassicCurrent focus
40 514-43 210 nt · Reverse (-)
DWW13_RS09185GCF_003479665#DWW13_RS09185
RROmpR
43 227-43 922 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS09180The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409295
Simplified PFAM architecture for HKOC_0409295
PFAM domain coverage: 158 / 898 aa (17.6%)
1 aa898 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[649-714] | HATPase_c[761-852]
- Domain count: 2
- Matched identifier: HKOC_0409295
- Positioned domains: HisKA 649-714 ; HATPase_c 761-852
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 958 · GCF_003479665
AssemblyASM347966v1 · Scaffoldhaploid
Genome composition3 904 804 bp · 47,0% GCBlautia sp. AF14-40
Signal transduction countsGenes 108 · HK 56 · RR 48CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key