1 SBP_bac_3#1
4-197 aa · 194 aa · 29.6% of protein
Raw token
SBP_bac_3:4:0.000000000799:197:211:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW13_RS02030
Histidine kinase, Hybrid
Blautia sp. AF14-40 · GCF_003479665
ClassHKTypeHybridLength655 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479665#DWW13_RS02030Stable P2CS identifier used across views.
GenomeGCF_003479665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length655 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 655 aa (75.7%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa655 aa
Domain-by-domain annotation4 items
2 HisKA#2
278-343 aa · 66 aa · 10.1% of protein
Raw token
HisKA:278:5.48e-19:343:66:643 HATPase_c#3
391-508 aa · 118 aa · 18.0% of protein
Raw token
HATPase_c:391:1.88e-27:508:119:1094 Response_reg#4
531-648 aa · 118 aa · 18.0% of protein
Raw token
Response_reg:531:4.61e-30:648:118:111- Raw architecture: SBP_bac_3:4:0.000000000799:197:211:224#HisKA:278:5.48e-19:343:66:64#HATPase_c:391:1.88e-27:508:119:109#Response_reg:531:4.61e-30:648:118:111
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479665::NZ_QUHK01000002.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1243-3174Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW13_02030RefSeq proteinWP_243025955.1
Context group ID
GCF_003479665::NZ_QUHK01000002.1::G00023Context members
DWW13_RS02030
Partner locus tags
DWW13_RS02030
Partner old locus tags
DWW13_02030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243025955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW13_RS02030Primary locus identifier stored in the genes table.
Old locus tagDWW13_02030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUHK01000002.1Sequence record reported by the local genomic context database.
Genomic interval1 243-3 174 nt1 932 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 243-3 174 ntGCF_003479665::NZ_QUHK01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479665::NZ_QUHK01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUHK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 243-3 174 nt1 932 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 243 nt3 174 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWW13_RS02030GCF_003479665#DWW13_RS02030
HKHybridCurrent focus
1 243-3 174 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS02030The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0883890
Simplified PFAM architecture for HKOC_0883890
PFAM domain coverage: 301 / 655 aa (46.0%)
1 aa655 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[278-343] | HATPase_c[391-507] | Response_reg[531-648]
- Domain count: 3
- Matched identifier: HKOC_0883890
- Positioned domains: HisKA 278-343 ; HATPase_c 391-507 ; Response_reg 531-648
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS02030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 958 · GCF_003479665
AssemblyASM347966v1 · Scaffoldhaploid
Genome composition3 904 804 bp · 47,0% GCBlautia sp. AF14-40
Signal transduction countsGenes 108 · HK 56 · RR 48CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key