1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000107:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW13_RS05190
Histidine kinase, Classic
Blautia sp. AF14-40 · GCF_003479665
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479665#DWW13_RS05190Stable P2CS identifier used across views.
GenomeGCF_003479665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000278:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:3.53e-17:451:106:109- Raw architecture: HAMP:152:0.0000107:222:71:69#HisKA:233:0.0000000000278:294:62:64#HATPase_c:346:3.53e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479665::NZ_QUHK01000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202708-204734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW13_05185RefSeq proteinWP_118719489.1
Context group ID
GCF_003479665::NZ_QUHK01000004.1::G00045Context members
DWW13_RS05185DWW13_RS05190
Partner locus tags
DWW13_RS05185DWW13_RS05190
Partner old locus tags
DWW13_05180DWW13_05185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719489.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW13_RS05190Primary locus identifier stored in the genes table.
Old locus tagDWW13_05185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUHK01000004.1Sequence record reported by the local genomic context database.
Genomic interval203 358-204 734 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 708-204 734 ntGCF_003479665::NZ_QUHK01000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479665::NZ_QUHK01000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUHK01000004.1All displayed genes belong to this local TCS context.
Neighborhood span202 708-204 734 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 708 nt204 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW13_RS05185GCF_003479665#DWW13_RS05185
RROmpR
202 708-203 370 nt · Forward (+)
DWW13_RS05190GCF_003479665#DWW13_RS05190
HKClassicCurrent focus
203 358-204 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS05190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862553
Simplified PFAM architecture for HKOC_1862553
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1862553
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS05190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 958 · GCF_003479665
AssemblyASM347966v1 · Scaffoldhaploid
Genome composition3 904 804 bp · 47,0% GCBlautia sp. AF14-40
Signal transduction countsGenes 108 · HK 56 · RR 48CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key