1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:9.51e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW77_RS07775
Response regulator OmpR family
Ruminococcus sp. AF17-12 · GCF_003479245
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479245#DWW77_RS07775Stable P2CS identifier used across views.
GenomeGCF_003479245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:1.79e-34:220:77:77- Raw architecture: Response_reg:2:9.51e-32:114:113:111#Trans_reg_C:147:1.79e-34:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479245::NZ_QUGY01000005.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span262226-264252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW77_07770RefSeq proteinWP_118608440.1
Context group ID
GCF_003479245::NZ_QUGY01000005.1::G00041Context members
DWW77_RS07770DWW77_RS07775
Partner locus tags
DWW77_RS07770DWW77_RS07775
Partner old locus tags
DWW77_07765DWW77_07770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118608440.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW77_RS07775Primary locus identifier stored in the genes table.
Old locus tagDWW77_07770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGY01000005.1Sequence record reported by the local genomic context database.
Genomic interval263 578-264 252 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span262 226-264 252 ntGCF_003479245::NZ_QUGY01000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479245::NZ_QUGY01000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGY01000005.1All displayed genes belong to this local TCS context.
Neighborhood span262 226-264 252 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
262 226 nt264 252 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW77_RS07770GCF_003479245#DWW77_RS07770
HKClassic
262 226-263 581 nt · Reverse (-)
DWW77_RS07775GCF_003479245#DWW77_RS07775
RROmpRCurrent focus
263 578-264 252 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479245#DWW77_RS07775The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543498
Simplified PFAM architecture for RROC_1543498
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1543498
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_003479245#DWW77_RS07775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 151 · GCF_003479245
AssemblyASM347924v1 · Scaffoldhaploid
Genome composition3 707 059 bp · 44,0% GCRuminococcus sp. AF17-12
Signal transduction countsGenes 89 · HK 42 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key