1 SBP_bac_3#1
52-253 aa · 202 aa · 21.4% of protein
Raw token
SBP_bac_3:52:1.55e-31:253:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX00_RS01505
Histidine kinase, Hybrid
Blautia sp. AF17-9LB · GCF_003479185
ClassHKTypeHybridLength942 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479185#DWX00_RS01505Stable P2CS identifier used across views.
GenomeGCF_003479185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length942 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage704 / 942 aa (74.7%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa942 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-485 aa · 199 aa · 21.1% of protein
Raw token
SBP_bac_3:287:0.0000000000637:485:216:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:9.68e-20:631:66:644 HATPase_c#4
678-796 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:678:1.85e-27:796:120:1095 Response_reg#5
819-936 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:819:8.61e-30:936:118:111- Raw architecture: SBP_bac_3:52:1.55e-31:253:212:224#SBP_bac_3:287:0.0000000000637:485:216:224#HisKA:566:9.68e-20:631:66:64#HATPase_c:678:1.85e-27:796:120:109#Response_reg:819:8.61e-30:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479185::NZ_QUGU01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span325005-327833Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX00_01505RefSeq proteinWP_118594523.1
Context group ID
GCF_003479185::NZ_QUGU01000001.1::G00002Context members
DWX00_RS01505
Partner locus tags
DWX00_RS01505
Partner old locus tags
DWX00_01505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118594523.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX00_RS01505Primary locus identifier stored in the genes table.
Old locus tagDWX00_01505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGU01000001.1Sequence record reported by the local genomic context database.
Genomic interval325 005-327 833 nt2 829 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span325 005-327 833 ntGCF_003479185::NZ_QUGU01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479185::NZ_QUGU01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span325 005-327 833 nt2 829 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
325 005 nt327 833 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX00_RS01505GCF_003479185#DWX00_RS01505
HKHybridCurrent focus
325 005-327 833 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482385#DXB02_RS10200Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0313745
Simplified PFAM architecture for HKOC_0313745
PFAM domain coverage: 698 / 967 aa (72.2%)
1 aa967 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[74-266] | SBP_bac_3[307-510] | HisKA[591-656] | HATPase_c[704-820] | Response_reg[844-961]
- Domain count: 5
- Matched identifier: HKOC_0313745
- Positioned domains: SBP_bac_3 74-266 ; SBP_bac_3 307-510 ; HisKA 591-656 ; HATPase_c 704-820 ; Response_reg 844-961
Cluster members and taxonomy
Representative gene: GCF_003482385#DXB02_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 959 · GCF_003479185
AssemblyASM347918v1 · Scaffoldhaploid
Genome composition4 076 914 bp · 46,5% GCBlautia sp. AF17-9LB
Signal transduction countsGenes 91 · HK 44 · RR 44CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key