1 Response_reg#1
4-65 aa · 62 aa · 63.3% of protein
Raw token
Response_reg:4:9.85e-16:65:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX32_RS20540
Response regulator, CheY family
Blautia sp. AF19-13LB · GCF_003479105
ClassRRTypeCheYLength98 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479105#DWX32_RS20540Stable P2CS identifier used across views.
GenomeGCF_003479105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length98 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 98 aa (63.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa98 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:9.85e-16:65:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479105::NZ_QUGO01000002.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35883-36179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX32_02415RefSeq proteinWP_118640087.1
Context group ID
GCF_003479105::NZ_QUGO01000002.1::G00021Context members
DWX32_RS20540
Partner locus tags
DWX32_RS20540
Partner old locus tags
DWX32_02415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118640087.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX32_RS20540Primary locus identifier stored in the genes table.
Old locus tagDWX32_02415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGO01000002.1Sequence record reported by the local genomic context database.
Genomic interval35 883-36 179 nt297 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 883-36 179 ntGCF_003479105::NZ_QUGO01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479105::NZ_QUGO01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span35 883-36 179 nt297 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 883 nt36 179 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX32_RS20540GCF_003479105#DWX32_RS20540
RRCheYCurrent focus
35 883-36 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS19095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472210
Simplified PFAM architecture for RROC_2472210
PFAM domain coverage: 64 / 98 aa (65.3%)
1 aa98 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-67]
- Domain count: 1
- Matched identifier: RROC_2472210
- Positioned domains: Response_reg 4-67 ; Response_reg 4-67
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS19095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 962 · GCF_003479105
AssemblyASM347910v1 · Scaffoldhaploid
Genome composition4 009 812 bp · 47,5% GCBlautia sp. AF19-13LB
Signal transduction countsGenes 99 · HK 49 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key