1 Response_reg#1
4-113 aa · 110 aa · 21.2% of protein
Raw token
Response_reg:4:1.94e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX32_RS18125
Response regulator, unclassified
Blautia sp. AF19-13LB · GCF_003479105
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479105#DWX32_RS18125Stable P2CS identifier used across views.
GenomeGCF_003479105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 519 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
465-498 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:465:0.00000064:498:34:42- Raw architecture: Response_reg:4:1.94e-34:113:110:111#HTH_AraC:465:0.00000064:498:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479105::NZ_QUGO01000030.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15138-18369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX32_18145RefSeq proteinWP_055222158.1
Context group ID
GCF_003479105::NZ_QUGO01000030.1::G00041Context members
DWX32_RS18125DWX32_RS18130
Partner locus tags
DWX32_RS18125DWX32_RS18130
Partner old locus tags
DWX32_18145DWX32_18150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055222158.1Primary protein accession used for annex mappings.
UniProt accessionA0A174VGS5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174VGS5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX32_RS18125Primary locus identifier stored in the genes table.
Old locus tagDWX32_18145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGO01000030.1Sequence record reported by the local genomic context database.
Genomic interval15 138-16 697 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 138-18 369 ntGCF_003479105::NZ_QUGO01000030.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479105::NZ_QUGO01000030.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGO01000030.1All displayed genes belong to this local TCS context.
Neighborhood span15 138-18 369 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 138 nt18 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX32_RS18125GCF_003479105#DWX32_RS18125
RRunclassifiedCurrent focus
15 138-16 697 nt · Forward (+)
DWX32_RS18130GCF_003479105#DWX32_RS18130
HKClassic
16 660-18 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS16095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127468
Simplified PFAM architecture for RROC_0127468
PFAM domain coverage: 190 / 519 aa (36.6%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[425-503]
- Domain count: 2
- Matched identifier: RROC_0127468
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 425-503 ; HTH_18 425-503
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS16095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 962 · GCF_003479105
AssemblyASM347910v1 · Scaffoldhaploid
Genome composition4 009 812 bp · 47,5% GCBlautia sp. AF19-13LB
Signal transduction countsGenes 99 · HK 49 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key