1 HAMP#1
164-231 aa · 68 aa · 14.1% of protein
Raw token
HAMP:164:0.0000000000139:231:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX32_RS04655
Histidine kinase, Classic
Blautia sp. AF19-13LB · GCF_003479105
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479105#DWX32_RS04655Stable P2CS identifier used across views.
GenomeGCF_003479105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 483 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-320 aa · 65 aa · 13.5% of protein
Raw token
HisKA:256:0.00000000265:320:65:643 HATPase_c#3
366-477 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:366:1.43e-26:477:113:109- Raw architecture: HAMP:164:0.0000000000139:231:68:69#HisKA:256:0.00000000265:320:65:64#HATPase_c:366:1.43e-26:477:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479105::NZ_QUGO01000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span205171-207271Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX32_04655RefSeq proteinWP_117950540.1
Context group ID
GCF_003479105::NZ_QUGO01000003.1::G00039Context members
DWX32_RS04650DWX32_RS04655
Partner locus tags
DWX32_RS04650DWX32_RS04655
Partner old locus tags
DWX32_04650DWX32_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117950540.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX32_RS04655Primary locus identifier stored in the genes table.
Old locus tagDWX32_04655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGO01000003.1Sequence record reported by the local genomic context database.
Genomic interval205 820-207 271 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span205 171-207 271 ntGCF_003479105::NZ_QUGO01000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479105::NZ_QUGO01000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span205 171-207 271 nt2 101 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 171 nt207 271 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX32_RS04650GCF_003479105#DWX32_RS04650
RROmpR
205 171-205 836 nt · Forward (+)
DWX32_RS04655GCF_003479105#DWX32_RS04655
HKClassicCurrent focus
205 820-207 271 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS14935Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1595972
Simplified PFAM architecture for HKOC_1595972
PFAM domain coverage: 224 / 483 aa (46.4%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[180-230] | HisKA[257-320] | HATPase_c[367-475]
- Domain count: 3
- Matched identifier: HKOC_1595972
- Positioned domains: HAMP 180-230 ; HisKA 257-320 ; HATPase_c 367-475
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS14935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 962 · GCF_003479105
AssemblyASM347910v1 · Scaffoldhaploid
Genome composition4 009 812 bp · 47,5% GCBlautia sp. AF19-13LB
Signal transduction countsGenes 99 · HK 49 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key