1 Response_reg#1
4-113 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:4:2.39e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS13610
Response regulator OmpR family
Clostridium sp. AF24-2LB · GCF_003478615
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478615#DWY27_RS13610Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 233 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.37e-34:230:78:77- Raw architecture: Response_reg:4:2.39e-40:113:111:111#Trans_reg_C:153:4.37e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478615::NZ_QUFT01000014.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12501-13202Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_13605RefSeq proteinWP_118468546.1
Context group ID
GCF_003478615::NZ_QUFT01000014.1::G00017Context members
DWY27_RS13610
Partner locus tags
DWY27_RS13610
Partner old locus tags
DWY27_13605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118468546.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS13610Primary locus identifier stored in the genes table.
Old locus tagDWY27_13605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000014.1Sequence record reported by the local genomic context database.
Genomic interval12 501-13 202 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 501-13 202 ntGCF_003478615::NZ_QUFT01000014.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000014.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000014.1All displayed genes belong to this local TCS context.
Neighborhood span12 501-13 202 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 501 nt13 202 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY27_RS13610GCF_003478615#DWY27_RS13610
RROmpRCurrent focus
12 501-13 202 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS10220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090546
Simplified PFAM architecture for RROC_1090546
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-230]
- Domain count: 2
- Matched identifier: RROC_1090546
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-230 ; Trans_reg_C 153-230
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS10220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key