1 HisKA#1
373-439 aa · 67 aa · 8.7% of protein
Raw token
HisKA:373:5.92e-17:439:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS00330
Histidine kinase, Hybrid
Clostridium sp. AF24-2LB · GCF_003478615
ClassHKTypeHybridLength769 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478615#DWY27_RS00330Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length769 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 769 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa769 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
486-604 aa · 119 aa · 15.5% of protein
Raw token
HATPase_c:486:1.72e-28:604:119:1093 Response_reg#3
632-748 aa · 117 aa · 15.2% of protein
Raw token
Response_reg:632:7.35e-27:748:117:111- Raw architecture: HisKA:373:5.92e-17:439:67:64#HATPase_c:486:1.72e-28:604:119:109#Response_reg:632:7.35e-27:748:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478615::NZ_QUFT01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57952-60261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_00330RefSeq proteinWP_333490946.1
Context group ID
GCF_003478615::NZ_QUFT01000001.1::G00003Context members
DWY27_RS00330
Partner locus tags
DWY27_RS00330
Partner old locus tags
DWY27_00330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_333490946.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS00330Primary locus identifier stored in the genes table.
Old locus tagDWY27_00330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000001.1Sequence record reported by the local genomic context database.
Genomic interval57 952-60 261 nt2 310 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span57 952-60 261 ntGCF_003478615::NZ_QUFT01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span57 952-60 261 nt2 310 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 952 nt60 261 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY27_RS00330GCF_003478615#DWY27_RS00330
HKHybridCurrent focus
57 952-60 261 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478615#DWY27_RS00330The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0622257
Simplified PFAM architecture for HKOC_0622257
PFAM domain coverage: 300 / 769 aa (39.0%)
1 aa769 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[373-439] | HATPase_c[487-603] | Response_reg[632-747]
- Domain count: 3
- Matched identifier: HKOC_0622257
- Positioned domains: HisKA 373-439 ; HATPase_c 487-603 ; Response_reg 632-747
Cluster members and taxonomy
Representative gene: GCF_003478615#DWY27_RS00330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key