1 HAMP#1
65-134 aa · 70 aa · 18.5% of protein
Raw token
HAMP:65:0.00000000164:134:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS10325
Histidine kinase, Classic
Clostridium sp. AF24-2LB · GCF_003478615
ClassHKTypeClassicLength379 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478615#DWY27_RS10325Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length379 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 379 aa (64.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa379 aa
Domain-by-domain annotation3 items
2 HisKA#2
146-212 aa · 67 aa · 17.7% of protein
Raw token
HisKA:146:3.89e-17:212:67:643 HATPase_c#3
258-366 aa · 109 aa · 28.8% of protein
Raw token
HATPase_c:258:1.32e-28:366:110:109- Raw architecture: HAMP:65:0.00000000164:134:70:69#HisKA:146:3.89e-17:212:67:64#HATPase_c:258:1.32e-28:366:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478615::NZ_QUFT01000007.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29317-31150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_10320RefSeq proteinWP_347559246.1
Context group ID
GCF_003478615::NZ_QUFT01000007.1::G00030Context members
DWY27_RS10325DWY27_RS10330
Partner locus tags
DWY27_RS10325DWY27_RS10330
Partner old locus tags
DWY27_10320DWY27_10325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347559246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS10325Primary locus identifier stored in the genes table.
Old locus tagDWY27_10320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000007.1Sequence record reported by the local genomic context database.
Genomic interval29 317-30 456 nt1 140 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 317-31 150 ntGCF_003478615::NZ_QUFT01000007.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000007.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000007.1All displayed genes belong to this local TCS context.
Neighborhood span29 317-31 150 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 317 nt31 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY27_RS10325GCF_003478615#DWY27_RS10325
HKClassicCurrent focus
29 317-30 456 nt · Reverse (-)
DWY27_RS10330GCF_003478615#DWY27_RS10330
RROmpR
30 446-31 150 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478615#DWY27_RS10325The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2620306
Simplified PFAM architecture for HKOC_2620306
PFAM domain coverage: 221 / 379 aa (58.3%)
1 aa379 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[87-133] | HisKA[146-211] | HATPase_c[259-366]
- Domain count: 3
- Matched identifier: HKOC_2620306
- Positioned domains: HAMP 87-133 ; HisKA 146-211 ; HATPase_c 259-366
Cluster members and taxonomy
Representative gene: GCF_003478615#DWY27_RS10325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key