1 HAMP#1
261-332 aa · 72 aa · 12.3% of protein
Raw token
HAMP:261:0.000000000000235:332:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS08120
Histidine kinase, Classic
Clostridium sp. AF24-2LB · GCF_003478615
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478615#DWY27_RS08120Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 585 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation3 items
2 HisKA#2
357-424 aa · 68 aa · 11.6% of protein
Raw token
HisKA:357:0.0000000000000109:424:68:643 HATPase_c#3
469-580 aa · 112 aa · 19.1% of protein
Raw token
HATPase_c:469:6.44e-20:580:113:109- Raw architecture: HAMP:261:0.000000000000235:332:72:69#HisKA:357:0.0000000000000109:424:68:64#HATPase_c:469:6.44e-20:580:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478615::NZ_QUFT01000004.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85276-87707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_08115RefSeq proteinWP_118468150.1
Context group ID
GCF_003478615::NZ_QUFT01000004.1::G00024Context members
DWY27_RS08115DWY27_RS08120
Partner locus tags
DWY27_RS08115DWY27_RS08120
Partner old locus tags
DWY27_08110DWY27_08115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118468150.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS08120Primary locus identifier stored in the genes table.
Old locus tagDWY27_08115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000004.1Sequence record reported by the local genomic context database.
Genomic interval85 950-87 707 nt1 758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 276-87 707 ntGCF_003478615::NZ_QUFT01000004.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000004.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span85 276-87 707 nt2 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 276 nt87 707 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY27_RS08115GCF_003478615#DWY27_RS08115
RROmpR
85 276-85 953 nt · Forward (+)
DWY27_RS08120GCF_003478615#DWY27_RS08120
HKClassicCurrent focus
85 950-87 707 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477925#DWZ45_RS06210Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1137542
Simplified PFAM architecture for HKOC_1137542
PFAM domain coverage: 233 / 585 aa (39.8%)
1 aa585 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[278-331] | HisKA[357-422] | HATPase_c[469-581]
- Domain count: 3
- Matched identifier: HKOC_1137542
- Positioned domains: HAMP 278-331 ; HisKA 357-422 ; HATPase_c 469-581
Cluster members and taxonomy
Representative gene: GCF_003477925#DWZ45_RS06210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key