1 GGDEF#1
138-276 aa · 139 aa · 19.7% of protein
Raw token
GGDEF:138:1.06e-38:276:151:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS05675
Response regulator, RpfG family
Clostridium sp. AF24-2LB · GCF_003478615
ClassRRTypeRpfGLength704 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478615#DWY27_RS05675Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length704 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage357 / 704 aa (50.7%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa704 aa
Domain-by-domain annotation3 items
2 Response_reg#2
308-420 aa · 113 aa · 16.1% of protein
Raw token
Response_reg:308:3.12e-25:420:114:1113 HD#3
497-601 aa · 105 aa · 14.9% of protein
Raw token
HD:497:0.00000000000107:601:105:110- Raw architecture: GGDEF:138:1.06e-38:276:151:160#Response_reg:308:3.12e-25:420:114:111#HD:497:0.00000000000107:601:105:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478615::NZ_QUFT01000002.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span154778-156892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_05670RefSeq proteinWP_333490942.1
Context group ID
GCF_003478615::NZ_QUFT01000002.1::G00019Context members
DWY27_RS05675
Partner locus tags
DWY27_RS05675
Partner old locus tags
DWY27_05670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_333490942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS05675Primary locus identifier stored in the genes table.
Old locus tagDWY27_05670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000002.1Sequence record reported by the local genomic context database.
Genomic interval154 778-156 892 nt2 115 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 778-156 892 ntGCF_003478615::NZ_QUFT01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000002.1All displayed genes belong to this local TCS context.
Neighborhood span154 778-156 892 nt2 115 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 778 nt156 892 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY27_RS05675GCF_003478615#DWY27_RS05675
RRRpfGCurrent focus
154 778-156 892 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS04405Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0029006
Simplified PFAM architecture for RROC_0029006
PFAM domain coverage: 387 / 704 aa (55.0%)
1 aa704 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[137-279] | Response_reg[308-420] | HD_5[490-620]
- Domain count: 3
- Matched identifier: RROC_0029006
- Positioned domains: GGDEF 137-279 ; GGDEF 137-279 ; Response_reg 308-420 ; Response_reg 308-420 ; HD_5 490-620 ; HD_5 490-620
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS04405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key