1 Response_reg#1
6-119 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:6:1.24e-31:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS01845
Response regulator, unclassified
Clostridium sp. AF24-2LB · GCF_003478615
ClassRRTypeunclassifiedLength542 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478615#DWY27_RS01845Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length542 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 542 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa542 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
443-485 aa · 43 aa · 7.9% of protein
Raw token
HTH_AraC:443:0.000000000779:485:43:423 HTH_AraC#3
506-535 aa · 30 aa · 5.5% of protein
Raw token
HTH_AraC:506:0.000000573:535:30:42- Raw architecture: Response_reg:6:1.24e-31:119:114:111#HTH_AraC:443:0.000000000779:485:43:42#HTH_AraC:506:0.000000573:535:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478615::NZ_QUFT01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span401628-405055Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_01845RefSeq proteinWP_118472438.1
Context group ID
GCF_003478615::NZ_QUFT01000001.1::G00011Context members
DWY27_RS01845DWY27_RS01850
Partner locus tags
DWY27_RS01845DWY27_RS01850
Partner old locus tags
DWY27_01845DWY27_01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118472438.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS01845Primary locus identifier stored in the genes table.
Old locus tagDWY27_01845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000001.1Sequence record reported by the local genomic context database.
Genomic interval401 628-403 256 nt1 629 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span401 628-405 055 ntGCF_003478615::NZ_QUFT01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span401 628-405 055 nt3 428 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
401 628 nt405 055 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY27_RS01845GCF_003478615#DWY27_RS01845
RRunclassifiedCurrent focus
401 628-403 256 nt · Forward (+)
DWY27_RS01850GCF_003478615#DWY27_RS01850
HKClassic
403 256-405 055 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477745#DWZ76_RS08620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0086018
Simplified PFAM architecture for RROC_0086018
PFAM domain coverage: 326 / 542 aa (60.1%)
1 aa542 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[163-296] | HTH_18[457-535]
- Domain count: 3
- Matched identifier: RROC_0086018
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 163-296 ; GGDEF_2 163-296 ; HTH_18 457-535 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_003477745#DWZ76_RS08620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key