1 HisKA#1
278-343 aa · 66 aa · 13.1% of protein
Raw token
HisKA:278:0.00000000000015:343:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY27_RS00735
Histidine kinase, Classic
Clostridium sp. AF24-2LB · GCF_003478615
ClassHKTypeClassicLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478615#DWY27_RS00735Stable P2CS identifier used across views.
GenomeGCF_003478615Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 504 aa (34.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
391-500 aa · 110 aa · 21.8% of protein
Raw token
HATPase_c:391:4.37e-35:500:110:109- Raw architecture: HisKA:278:0.00000000000015:343:66:64#HATPase_c:391:4.37e-35:500:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478615::NZ_QUFT01000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span163192-164706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY27_00735RefSeq proteinWP_118467263.1
Context group ID
GCF_003478615::NZ_QUFT01000001.1::G00006Context members
DWY27_RS00735
Partner locus tags
DWY27_RS00735
Partner old locus tags
DWY27_00735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118467263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY27_RS00735Primary locus identifier stored in the genes table.
Old locus tagDWY27_00735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUFT01000001.1Sequence record reported by the local genomic context database.
Genomic interval163 192-164 706 nt1 515 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 192-164 706 ntGCF_003478615::NZ_QUFT01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478615::NZ_QUFT01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUFT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span163 192-164 706 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 192 nt164 706 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY27_RS00735GCF_003478615#DWY27_RS00735
HKClassicCurrent focus
163 192-164 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477925#DWZ45_RS01650Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1455208
Simplified PFAM architecture for HKOC_1455208
PFAM domain coverage: 176 / 504 aa (34.9%)
1 aa504 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[278-343] | HATPase_c[391-500]
- Domain count: 2
- Matched identifier: HKOC_1455208
- Positioned domains: HisKA 278-343 ; HATPase_c 391-500
Cluster members and taxonomy
Representative gene: GCF_003477925#DWZ45_RS01650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 007 · GCF_003478615
AssemblyASM347861v1 · Scaffoldhaploid
Genome composition3 306 376 bp · 48,5% GCClostridium sp. AF24-2LB
Signal transduction countsGenes 59 · HK 30 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key