1 Response_reg#1
5-111 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:5:6.83e-35:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS21545
Response regulator OmpR family
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS21545Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:147:3.47e-23:221:76:77- Raw architecture: Response_reg:5:6.83e-35:111:109:111#Trans_reg_C:147:3.47e-23:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000017.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119864-121719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_21535RefSeq proteinWP_054352549.1
Context group ID
GCF_003478165::NZ_QUER01000017.1::G00051Context members
DXA40_RS21545DXA40_RS21550
Partner locus tags
DXA40_RS21545DXA40_RS21550
Partner old locus tags
DXA40_21535DXA40_21540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054352549.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FK47Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FK47_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS21545Primary locus identifier stored in the genes table.
Old locus tagDXA40_21535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000017.1Sequence record reported by the local genomic context database.
Genomic interval119 864-120 535 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 864-121 719 ntGCF_003478165::NZ_QUER01000017.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000017.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000017.1All displayed genes belong to this local TCS context.
Neighborhood span119 864-121 719 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 864 nt121 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS21545GCF_003478165#DXA40_RS21545
RROmpRCurrent focus
119 864-120 535 nt · Forward (+)
DXA40_RS21550GCF_003478165#DXA40_RS21550
HKClassic
120 523-121 719 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS21545The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600298
Simplified PFAM architecture for RROC_1600298
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1600298
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS21545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key