1 sCache_like#1
43-133 aa · 91 aa · 20.6% of protein
Raw token
sCache_like:43:0.000000136:133:96:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS12410
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS12410Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 442 aa (60.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-290 aa · 65 aa · 14.7% of protein
Raw token
HisKA:226:2.54e-17:290:65:643 HATPase_c#3
334-442 aa · 109 aa · 24.7% of protein
Raw token
HATPase_c:334:6e-32:442:109:109- Raw architecture: sCache_like:43:0.000000136:133:96:114#HisKA:226:2.54e-17:290:65:64#HATPase_c:334:6e-32:442:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000007.1::G00134
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113924-115923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_12405RefSeq proteinWP_103731937.1
Context group ID
GCF_003478165::NZ_QUER01000007.1::G00134Context members
DXA40_RS12410DXA40_RS12415
Partner locus tags
DXA40_RS12410DXA40_RS12415
Partner old locus tags
DXA40_12405DXA40_12410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731937.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F604Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F604_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS12410Primary locus identifier stored in the genes table.
Old locus tagDXA40_12405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000007.1Sequence record reported by the local genomic context database.
Genomic interval113 924-115 252 nt1 329 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 924-115 923 ntGCF_003478165::NZ_QUER01000007.1::G00134
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000007.1::G00134Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000007.1All displayed genes belong to this local TCS context.
Neighborhood span113 924-115 923 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 924 nt115 923 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS12410GCF_003478165#DXA40_RS12410
HKClassicCurrent focus
113 924-115 252 nt · Reverse (-)
DXA40_RS12415GCF_003478165#DXA40_RS12415
RROmpR
115 249-115 923 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS12410The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2053902
Simplified PFAM architecture for HKOC_2053902
PFAM domain coverage: 264 / 442 aa (59.7%)
1 aa442 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[38-131] | HisKA[226-290] | HATPase_c[337-441]
- Domain count: 3
- Matched identifier: HKOC_2053902
- Positioned domains: sCache_like 38-131 ; HisKA 226-290 ; HATPase_c 337-441
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS12410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key