1 Response_reg#1
4-108 aa · 105 aa · 21.3% of protein
Raw token
Response_reg:4:1.4e-23:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS08450
Response regulator, unclassified
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeunclassifiedLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS08450Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 492 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
402-440 aa · 39 aa · 7.9% of protein
Raw token
HTH_AraC:402:0.00000627:440:39:423 HTH_AraC#3
455-490 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:455:0.000000101:490:36:42- Raw architecture: Response_reg:4:1.4e-23:108:105:111#HTH_AraC:402:0.00000627:440:39:42#HTH_AraC:455:0.000000101:490:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000004.1::G00110
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span271484-274633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_08455RefSeq proteinWP_118593873.1
Context group ID
GCF_003478165::NZ_QUER01000004.1::G00110Context members
DXA40_RS08445DXA40_RS08450
Partner locus tags
DXA40_RS08445DXA40_RS08450
Partner old locus tags
DXA40_08450DXA40_08455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118593873.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F732Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F732_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS08450Primary locus identifier stored in the genes table.
Old locus tagDXA40_08455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000004.1Sequence record reported by the local genomic context database.
Genomic interval273 155-274 633 nt1 479 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span271 484-274 633 ntGCF_003478165::NZ_QUER01000004.1::G00110
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000004.1::G00110Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000004.1All displayed genes belong to this local TCS context.
Neighborhood span271 484-274 633 nt3 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
271 484 nt274 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS08445GCF_003478165#DXA40_RS08445
HKClassic
271 484-273 148 nt · Forward (+)
DXA40_RS08450GCF_003478165#DXA40_RS08450
RRunclassifiedCurrent focus
273 155-274 633 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS08450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0166971
Simplified PFAM architecture for RROC_0166971
PFAM domain coverage: 193 / 492 aa (39.2%)
1 aa492 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[412-490]
- Domain count: 2
- Matched identifier: RROC_0166971
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 412-490 ; HTH_18 412-490
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS08450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key