1 Response_reg#1
4-114 aa · 111 aa · 44.8% of protein
Raw token
Response_reg:4:1.07e-24:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS08375
Response regulator, unclassified
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeunclassifiedLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS08375Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 248 aa (76.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-189 aa · 42 aa · 16.9% of protein
Raw token
HTH_AraC:148:0.0000000662:189:42:423 HTH_AraC#3
204-239 aa · 36 aa · 14.5% of protein
Raw token
HTH_AraC:204:0.0000000155:239:36:42- Raw architecture: Response_reg:4:1.07e-24:114:111:111#HTH_AraC:148:0.0000000662:189:42:42#HTH_AraC:204:0.0000000155:239:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000004.1::G00109
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span252524-255023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_08380RefSeq proteinWP_054350640.1
Context group ID
GCF_003478165::NZ_QUER01000004.1::G00109Context members
DXA40_RS08375DXA40_RS08380
Partner locus tags
DXA40_RS08375DXA40_RS08380
Partner old locus tags
DXA40_08380DXA40_08385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350640.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F715Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F715_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS08375Primary locus identifier stored in the genes table.
Old locus tagDXA40_08380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000004.1Sequence record reported by the local genomic context database.
Genomic interval252 524-253 270 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 524-255 023 ntGCF_003478165::NZ_QUER01000004.1::G00109
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000004.1::G00109Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000004.1All displayed genes belong to this local TCS context.
Neighborhood span252 524-255 023 nt2 500 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 524 nt255 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS08375GCF_003478165#DXA40_RS08375
RRunclassifiedCurrent focus
252 524-253 270 nt · Reverse (-)
DXA40_RS08380GCF_003478165#DXA40_RS08380
HKClassic
253 242-255 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS08375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746275
Simplified PFAM architecture for RROC_0746275
PFAM domain coverage: 191 / 248 aa (77.0%)
1 aa248 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[161-239]
- Domain count: 2
- Matched identifier: RROC_0746275
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 161-239 ; HTH_18 161-239
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS08375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key