1 dCache_1#1
41-285 aa · 245 aa · 40.0% of protein
Raw token
dCache_1:41:0.0000000357:285:252:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS06370
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS06370Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage506 / 612 aa (82.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.4% of protein
Raw token
HAMP:305:1.52e-17:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:389:2.68e-27:468:80:804 HATPase_c#4
485-595 aa · 111 aa · 18.1% of protein
Raw token
HATPase_c:485:0.000000000000137:595:111:109- Raw architecture: dCache_1:41:0.0000000357:285:252:195#HAMP:305:1.52e-17:374:70:69#His_kinase:389:2.68e-27:468:80:80#HATPase_c:485:0.000000000000137:595:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000003.1::G00089
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span251036-254438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_06375RefSeq proteinWP_054350377.1
Context group ID
GCF_003478165::NZ_QUER01000003.1::G00089Context members
DXA40_RS06370DXA40_RS06375
Partner locus tags
DXA40_RS06370DXA40_RS06375
Partner old locus tags
DXA40_06375DXA40_06380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350377.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FA86Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FA86_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS06370Primary locus identifier stored in the genes table.
Old locus tagDXA40_06375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000003.1Sequence record reported by the local genomic context database.
Genomic interval251 036-252 874 nt1 839 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span251 036-254 438 ntGCF_003478165::NZ_QUER01000003.1::G00089
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000003.1::G00089Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000003.1All displayed genes belong to this local TCS context.
Neighborhood span251 036-254 438 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
251 036 nt254 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS06370GCF_003478165#DXA40_RS06370
HKClassicCurrent focus
251 036-252 874 nt · Forward (+)
DXA40_RS06375GCF_003478165#DXA40_RS06375
RRunclassified
252 867-254 438 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06370The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0998075
Simplified PFAM architecture for HKOC_0998075
PFAM domain coverage: 242 / 612 aa (39.5%)
1 aa612 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[323-373] | His_kinase[389-468] | HATPase_c[485-595]
- Domain count: 3
- Matched identifier: HKOC_0998075
- Positioned domains: HAMP 323-373 ; His_kinase 389-468 ; HATPase_c 485-595
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key