1 Response_reg#1
3-115 aa · 113 aa · 46.1% of protein
Raw token
Response_reg:3:2.91e-27:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS01100
Response regulator, unclassified
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeunclassifiedLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS01100Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 245 aa (63.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
151-192 aa · 42 aa · 17.1% of protein
Raw token
HTH_AraC:151:0.00000409:192:42:42- Raw architecture: Response_reg:3:2.91e-27:115:113:111#HTH_AraC:151:0.00000409:192:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span259876-262448Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_01100RefSeq proteinWP_033141039.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00007Context members
DXA40_RS01100DXA40_RS01105
Partner locus tags
DXA40_RS01100DXA40_RS01105
Partner old locus tags
DXA40_01100DXA40_01105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033141039.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DK66Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DK66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS01100Primary locus identifier stored in the genes table.
Old locus tagDXA40_01100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval259 876-260 613 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span259 876-262 448 ntGCF_003478165::NZ_QUER01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span259 876-262 448 nt2 573 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
259 876 nt262 448 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS01100GCF_003478165#DXA40_RS01100
RRunclassifiedCurrent focus
259 876-260 613 nt · Reverse (-)
DXA40_RS01105GCF_003478165#DXA40_RS01105
HKClassic
260 610-262 448 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0793537
Simplified PFAM architecture for RROC_0793537
PFAM domain coverage: 192 / 245 aa (78.4%)
1 aa245 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[164-242]
- Domain count: 2
- Matched identifier: RROC_0793537
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 164-242 ; HTH_18 164-242
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key