1 HisKA#1
33-102 aa · 70 aa · 25.5% of protein
Raw token
HisKA:33:0.00000000133:102:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS00570
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength274 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478165#DXA40_RS00570Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 274 aa (68.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa274 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
150-267 aa · 118 aa · 43.1% of protein
Raw token
HATPase_c:150:6.95e-28:267:119:109- Raw architecture: HisKA:33:0.00000000133:102:70:64#HATPase_c:150:6.95e-28:267:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478165::NZ_QUER01000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span132822-133646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_00570RefSeq proteinWP_054352139.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00004Context members
DXA40_RS00570
Partner locus tags
DXA40_RS00570
Partner old locus tags
DXA40_00570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054352139.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F9T5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F9T5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS00570Primary locus identifier stored in the genes table.
Old locus tagDXA40_00570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval132 822-133 646 nt825 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 822-133 646 ntGCF_003478165::NZ_QUER01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span132 822-133 646 nt825 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 822 nt133 646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA40_RS00570GCF_003478165#DXA40_RS00570
HKClassicCurrent focus
132 822-133 646 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00570The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2905138
Simplified PFAM architecture for HKOC_2905138
PFAM domain coverage: 186 / 274 aa (67.9%)
1 aa274 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[34-102] | HATPase_c[151-267]
- Domain count: 2
- Matched identifier: HKOC_2905138
- Positioned domains: HisKA 34-102 ; HATPase_c 151-267
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key