1 HisKA#1
197-260 aa · 64 aa · 15.1% of protein
Raw token
HisKA:197:0.0000000108:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ82_RS01355
Histidine kinase, Classic
Butyricicoccus sp. AF35-5AC · GCF_003477715
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477715#DWZ82_RS01355Stable P2CS identifier used across views.
GenomeGCF_003477715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 423 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-419 aa · 111 aa · 26.2% of protein
Raw token
HATPase_c:309:4.05e-31:419:111:109- Raw architecture: HisKA:197:0.0000000108:260:64:64#HATPase_c:309:4.05e-31:419:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477715::NZ_QUDX01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span293928-295864Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ82_01360RefSeq proteinWP_243022858.1
Context group ID
GCF_003477715::NZ_QUDX01000001.1::G00004Context members
DWZ82_RS01355DWZ82_RS01360
Partner locus tags
DWZ82_RS01355DWZ82_RS01360
Partner old locus tags
DWZ82_01360DWZ82_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243022858.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ82_RS01355Primary locus identifier stored in the genes table.
Old locus tagDWZ82_01360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDX01000001.1Sequence record reported by the local genomic context database.
Genomic interval293 928-295 178 nt1 251 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span293 928-295 864 ntGCF_003477715::NZ_QUDX01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477715::NZ_QUDX01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDX01000001.1All displayed genes belong to this local TCS context.
Neighborhood span293 928-295 864 nt1 937 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
293 928 nt295 864 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ82_RS01355GCF_003477715#DWZ82_RS01355
HKClassicCurrent focus
293 928-295 178 nt · Reverse (-)
DWZ82_RS01360GCF_003477715#DWZ82_RS01360
RROmpR
295 175-295 864 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477715#DWZ82_RS01355The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2237456
Simplified PFAM architecture for HKOC_2237456
PFAM domain coverage: 176 / 423 aa (41.6%)
1 aa423 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2237456
- Positioned domains: HisKA 196-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_003477715#DWZ82_RS01355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 003 · GCF_003477715
AssemblyASM347771v1 · Scaffoldhaploid
Genome composition3 138 006 bp · 54,0% GCButyricicoccus sp. AF35-5AC
Signal transduction countsGenes 80 · HK 38 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key