1 HAMP#1
87-156 aa · 70 aa · 18.3% of protein
Raw token
HAMP:87:0.00000000000515:156:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS14520
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS14520Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 383 aa (64.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 17.5% of protein
Raw token
HisKA:160:0.0000000000014:226:67:643 HATPase_c#3
272-379 aa · 108 aa · 28.2% of protein
Raw token
HATPase_c:272:2.23e-29:379:108:109- Raw architecture: HAMP:87:0.00000000000515:156:70:69#HisKA:160:0.0000000000014:226:67:64#HATPase_c:272:2.23e-29:379:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000015.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8622-10447Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_14515RefSeq proteinWP_118469108.1
Context group ID
GCF_003477445::NZ_QUDH01000015.1::G00007Context members
DW085_RS14515DW085_RS14520
Partner locus tags
DW085_RS14515DW085_RS14520
Partner old locus tags
DW085_14510DW085_14515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118469108.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS14520Primary locus identifier stored in the genes table.
Old locus tagDW085_14515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000015.1Sequence record reported by the local genomic context database.
Genomic interval9 296-10 447 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 622-10 447 ntGCF_003477445::NZ_QUDH01000015.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000015.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000015.1All displayed genes belong to this local TCS context.
Neighborhood span8 622-10 447 nt1 826 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 622 nt10 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS14515GCF_003477445#DW085_RS14515
RROmpR
8 622-9 299 nt · Forward (+)
DW085_RS14520GCF_003477445#DW085_RS14520
HKClassicCurrent focus
9 296-10 447 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS14520The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2583586
Simplified PFAM architecture for HKOC_2583586
PFAM domain coverage: 228 / 383 aa (59.5%)
1 aa383 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[160-226] | HATPase_c[271-378]
- Domain count: 3
- Matched identifier: HKOC_2583586
- Positioned domains: HAMP 103-155 ; HisKA 160-226 ; HATPase_c 271-378
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS14520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key