1 Response_reg#1
7-110 aa · 104 aa · 13.1% of protein
Raw token
Response_reg:7:2.49e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS11395
Response regulator, RpfG family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeRpfGLength793 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS11395Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length793 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 793 aa (44.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa793 aa
Domain-by-domain annotation3 items
2 HD#2
194-299 aa · 106 aa · 13.4% of protein
Raw token
HD:194:0.00000000000000584:299:106:1103 GGDEF#3
646-789 aa · 144 aa · 18.2% of protein
Raw token
GGDEF:646:7.55e-36:789:158:160- Raw architecture: Response_reg:7:2.49e-27:110:105:111#HD:194:0.00000000000000584:299:106:110#GGDEF:646:7.55e-36:789:158:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000008.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72231-74612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_11390RefSeq proteinWP_243029891.1
Context group ID
GCF_003474415::NZ_QUDG01000008.1::G00033Context members
DW088_RS11395
Partner locus tags
DW088_RS11395
Partner old locus tags
DW088_11390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243029891.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS11395Primary locus identifier stored in the genes table.
Old locus tagDW088_11390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000008.1Sequence record reported by the local genomic context database.
Genomic interval72 231-74 612 nt2 382 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 231-74 612 ntGCF_003474415::NZ_QUDG01000008.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000008.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span72 231-74 612 nt2 382 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 231 nt74 612 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS11395GCF_003474415#DW088_RS11395
RRRpfGCurrent focus
72 231-74 612 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS11395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016341
Simplified PFAM architecture for RROC_0016341
PFAM domain coverage: 378 / 793 aa (47.7%)
1 aa793 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-111] | HD_5[191-320] | GGDEF[646-788]
- Domain count: 3
- Matched identifier: RROC_0016341
- Positioned domains: Response_reg 7-111 ; Response_reg 7-111 ; HD_5 191-320 ; HD_5 191-320 ; GGDEF 646-788 ; GGDEF 646-788
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS11395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key