1 Response_reg#1
7-120 aa · 114 aa · 45.1% of protein
Raw token
Response_reg:7:1.29e-20:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS11140
Response regulator Spo0A family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeSpo0ALength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS11140Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 253 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
142-245 aa · 104 aa · 41.1% of protein
Raw token
Spo0A_C:142:1.57e-68:245:104:104- Raw architecture: Response_reg:7:1.29e-20:120:114:111#Spo0A_C:142:1.57e-68:245:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000008.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19884-20645Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_11135RefSeq proteinWP_118360776.1
Context group ID
GCF_003474415::NZ_QUDG01000008.1::G00032Context members
DW088_RS11140
Partner locus tags
DW088_RS11140
Partner old locus tags
DW088_11135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118360776.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1DY57Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1DY57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS11140Primary locus identifier stored in the genes table.
Old locus tagDW088_11135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000008.1Sequence record reported by the local genomic context database.
Genomic interval19 884-20 645 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 884-20 645 ntGCF_003474415::NZ_QUDG01000008.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000008.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span19 884-20 645 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 884 nt20 645 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS11140GCF_003474415#DW088_RS11140
RRSpo0ACurrent focus
19 884-20 645 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS11140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0697266
Simplified PFAM architecture for RROC_0697266
PFAM domain coverage: 217 / 253 aa (85.8%)
1 aa253 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[142-245]
- Domain count: 2
- Matched identifier: RROC_0697266
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 142-245 ; Spo0A_C 142-245
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS11140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key