1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:1.63e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10885
Response regulator NarL family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeNarLLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS10885Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 225 aa (75.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 25.3% of protein
Raw token
HTH_LUXR:155:9.76e-19:211:57:58- Raw architecture: Response_reg:4:1.63e-32:116:113:111#HTH_LUXR:155:9.76e-19:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000007.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119726-121688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10880RefSeq proteinWP_118360727.1
Context group ID
GCF_003474415::NZ_QUDG01000007.1::G00031Context members
DW088_RS16345DW088_RS10885
Partner locus tags
DW088_RS16345DW088_RS10885
Partner old locus tags
DW088_10880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360727.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10885Primary locus identifier stored in the genes table.
Old locus tagDW088_10880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000007.1Sequence record reported by the local genomic context database.
Genomic interval121 011-121 688 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 726-121 688 ntGCF_003474415::NZ_QUDG01000007.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000007.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span119 726-121 688 nt1 963 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 726 nt121 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS16345GCF_003474415#DW088_RS16345
HKClassic
119 726-121 018 nt · Forward (+)
DW088_RS10885GCF_003474415#DW088_RS10885
RRNarLCurrent focus
121 011-121 688 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479981
Simplified PFAM architecture for RROC_1479981
PFAM domain coverage: 166 / 225 aa (73.8%)
1 aa225 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[159-211]
- Domain count: 2
- Matched identifier: RROC_1479981
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 159-211 ; GerE 159-211
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key