1 Response_reg#1
4-115 aa · 112 aa · 58.9% of protein
Raw token
Response_reg:4:0.0000132:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10660
Response regulator, AmiR_NasR family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeAmiR_NasRLength190 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS10660Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length190 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 190 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa190 aa
Domain-by-domain annotation2 items
2 ANTAR#2
137-185 aa · 49 aa · 25.8% of protein
Raw token
ANTAR:137:0.0000000000000187:185:49:49- Raw architecture: Response_reg:4:0.0000132:115:113:111#ANTAR:137:0.0000000000000187:185:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000007.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73033-73605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10655RefSeq proteinWP_118360699.1
Context group ID
GCF_003474415::NZ_QUDG01000007.1::G00030Context members
DW088_RS10660
Partner locus tags
DW088_RS10660
Partner old locus tags
DW088_10655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360699.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10660Primary locus identifier stored in the genes table.
Old locus tagDW088_10655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000007.1Sequence record reported by the local genomic context database.
Genomic interval73 033-73 605 nt573 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 033-73 605 ntGCF_003474415::NZ_QUDG01000007.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000007.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span73 033-73 605 nt573 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 033 nt73 605 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS10660GCF_003474415#DW088_RS10660
RRAmiR_NasRCurrent focus
73 033-73 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10660The current gene is the representative for this cluster.
PFAM architectureANTAR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2170763
Simplified PFAM architecture for RROC_2170763
PFAM domain coverage: 53 / 190 aa (27.9%)
1 aa190 aa
ANTAR
- Simplified architecture: ANTAR
- Raw architecture: ANTAR[133-185]
- Domain count: 1
- Matched identifier: RROC_2170763
- Positioned domains: ANTAR 133-185 ; ANTAR 133-185
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key