1 HAMP#1
289-360 aa · 72 aa · 12.3% of protein
Raw token
HAMP:289:0.000000256:360:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10265
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS10265Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 586 aa (41.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 HisKA#2
371-434 aa · 64 aa · 10.9% of protein
Raw token
HisKA:371:0.00000000000000494:434:64:643 HATPase_c#3
479-582 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:479:3.85e-21:582:106:109- Raw architecture: HAMP:289:0.000000256:360:72:69#HisKA:371:0.00000000000000494:434:64:64#HATPase_c:479:3.85e-21:582:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000006.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span171454-173888Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10260RefSeq proteinWP_118360640.1
Context group ID
GCF_003474415::NZ_QUDG01000006.1::G00027Context members
DW088_RS10260DW088_RS10265
Partner locus tags
DW088_RS10260DW088_RS10265
Partner old locus tags
DW088_10255DW088_10260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360640.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10265Primary locus identifier stored in the genes table.
Old locus tagDW088_10260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000006.1Sequence record reported by the local genomic context database.
Genomic interval172 128-173 888 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span171 454-173 888 ntGCF_003474415::NZ_QUDG01000006.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000006.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span171 454-173 888 nt2 435 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
171 454 nt173 888 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS10260GCF_003474415#DW088_RS10260
RROmpR
171 454-172 131 nt · Forward (+)
DW088_RS10265GCF_003474415#DW088_RS10265
HKClassicCurrent focus
172 128-173 888 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10265The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132416
Simplified PFAM architecture for HKOC_1132416
PFAM domain coverage: 167 / 586 aa (28.5%)
1 aa586 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[372-434] | HATPase_c[479-582]
- Domain count: 2
- Matched identifier: HKOC_1132416
- Positioned domains: HisKA 372-434 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key