1 Response_reg#1
4-116 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:4:5.78e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10130
Response regulator, unclassified
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS10130Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 519 aa (36.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-464 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:422:0.000000000191:464:43:423 HTH_AraC#3
479-513 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:479:0.0000000163:513:35:42- Raw architecture: Response_reg:4:5.78e-32:116:113:111#HTH_AraC:422:0.000000000191:464:43:42#HTH_AraC:479:0.0000000163:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138877-141869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10125RefSeq proteinWP_118360621.1
Context group ID
GCF_003474415::NZ_QUDG01000006.1::G00026Context members
DW088_RS10125DW088_RS10130
Partner locus tags
DW088_RS10125DW088_RS10130
Partner old locus tags
DW088_10120DW088_10125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360621.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10130Primary locus identifier stored in the genes table.
Old locus tagDW088_10125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000006.1Sequence record reported by the local genomic context database.
Genomic interval140 310-141 869 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 877-141 869 ntGCF_003474415::NZ_QUDG01000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span138 877-141 869 nt2 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 877 nt141 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS10125GCF_003474415#DW088_RS10125
HKClassic
138 877-140 313 nt · Forward (+)
DW088_RS10130GCF_003474415#DW088_RS10130
RRunclassifiedCurrent focus
140 310-141 869 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127728
Simplified PFAM architecture for RROC_0127728
PFAM domain coverage: 312 / 519 aa (60.1%)
1 aa519 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[160-280] | HTH_18[437-515]
- Domain count: 3
- Matched identifier: RROC_0127728
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GGDEF_2 160-280 ; GGDEF_2 160-280 ; HTH_18 437-515 ; HTH_18 437-515
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key