1 SBP_bac_3#1
38-255 aa · 218 aa · 23.2% of protein
Raw token
SBP_bac_3:38:8.48e-20:255:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10110
Histidine kinase, Hybrid
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeHybridLength939 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS10110Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PBPbHisKAHATPase_cResponse_reg
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage664 / 939 aa (70.7%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 PBPb#2
332-481 aa · 150 aa · 16.0% of protein
Raw token
PBPb:332:0.00000000000000223:481:160:2193 HisKA#3
562-628 aa · 67 aa · 7.1% of protein
Raw token
HisKA:562:3.69e-16:628:67:644 HATPase_c#4
677-792 aa · 116 aa · 12.4% of protein
Raw token
HATPase_c:677:4.82e-26:792:117:1095 Response_reg#5
816-928 aa · 113 aa · 12.0% of protein
Raw token
Response_reg:816:3.15e-25:928:113:111- Raw architecture: SBP_bac_3:38:8.48e-20:255:227:224#PBPb:332:0.00000000000000223:481:160:219#HisKA:562:3.69e-16:628:67:64#HATPase_c:677:4.82e-26:792:117:109#Response_reg:816:3.15e-25:928:113:111
- Domain description: 1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000006.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span133257-136076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10105RefSeq proteinWP_158574662.1
Context group ID
GCF_003474415::NZ_QUDG01000006.1::G00025Context members
DW088_RS10110
Partner locus tags
DW088_RS10110
Partner old locus tags
DW088_10105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158574662.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10110Primary locus identifier stored in the genes table.
Old locus tagDW088_10105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000006.1Sequence record reported by the local genomic context database.
Genomic interval133 257-136 076 nt2 820 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 257-136 076 ntGCF_003474415::NZ_QUDG01000006.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000006.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span133 257-136 076 nt2 820 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 257 nt136 076 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS10110GCF_003474415#DW088_RS10110
HKHybridCurrent focus
133 257-136 076 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10110The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341403
Simplified PFAM architecture for HKOC_0341403
PFAM domain coverage: 509 / 939 aa (54.2%)
1 aa939 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[44-254] | HisKA[562-628] | HATPase_c[678-792] | Response_reg[816-931]
- Domain count: 4
- Matched identifier: HKOC_0341403
- Positioned domains: SBP_bac_3 44-254 ; HisKA 562-628 ; HATPase_c 678-792 ; Response_reg 816-931
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key