1 HAMP#1
90-157 aa · 68 aa · 17.8% of protein
Raw token
HAMP:90:0.00000000143:157:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS10020
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS10020Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 383 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-227 aa · 67 aa · 17.5% of protein
Raw token
HisKA:161:0.0000000000227:227:67:643 HATPase_c#3
269-379 aa · 111 aa · 29.0% of protein
Raw token
HATPase_c:269:9.4e-34:379:111:109- Raw architecture: HAMP:90:0.00000000143:157:68:69#HisKA:161:0.0000000000227:227:67:64#HATPase_c:269:9.4e-34:379:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000006.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103840-105662Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_10015RefSeq proteinWP_118360601.1
Context group ID
GCF_003474415::NZ_QUDG01000006.1::G00024Context members
DW088_RS10015DW088_RS10020
Partner locus tags
DW088_RS10015DW088_RS10020
Partner old locus tags
DW088_10010DW088_10015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360601.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS10020Primary locus identifier stored in the genes table.
Old locus tagDW088_10015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000006.1Sequence record reported by the local genomic context database.
Genomic interval104 511-105 662 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 840-105 662 ntGCF_003474415::NZ_QUDG01000006.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000006.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span103 840-105 662 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 840 nt105 662 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS10015GCF_003474415#DW088_RS10015
RROmpR
103 840-104 514 nt · Forward (+)
DW088_RS10020GCF_003474415#DW088_RS10020
HKClassicCurrent focus
104 511-105 662 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS10020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2583582
Simplified PFAM architecture for HKOC_2583582
PFAM domain coverage: 226 / 383 aa (59.0%)
1 aa383 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-156] | HisKA[161-226] | HATPase_c[272-379]
- Domain count: 3
- Matched identifier: HKOC_2583582
- Positioned domains: HAMP 105-156 ; HisKA 161-226 ; HATPase_c 272-379
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS10020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key