1 Response_reg#1
4-119 aa · 116 aa · 51.3% of protein
Raw token
Response_reg:4:1.23e-37:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS09840
Response regulator OmpR family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS09840Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 226 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:151:2.39e-29:224:77:77- Raw architecture: Response_reg:4:1.23e-37:119:116:111#Trans_reg_C:151:2.39e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000006.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69194-71397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_09835RefSeq proteinWP_110435724.1
Context group ID
GCF_003474415::NZ_QUDG01000006.1::G00023Context members
DW088_RS09840DW088_RS09845
Partner locus tags
DW088_RS09840DW088_RS09845
Partner old locus tags
DW088_09835DW088_09840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110435724.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4VYA8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4VYA8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS09840Primary locus identifier stored in the genes table.
Old locus tagDW088_09835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000006.1Sequence record reported by the local genomic context database.
Genomic interval69 194-69 874 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 194-71 397 ntGCF_003474415::NZ_QUDG01000006.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000006.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span69 194-71 397 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 194 nt71 397 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS09840GCF_003474415#DW088_RS09840
RROmpRCurrent focus
69 194-69 874 nt · Forward (+)
DW088_RS09845GCF_003474415#DW088_RS09845
HKClassic
69 871-71 397 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS09840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421414
Simplified PFAM architecture for RROC_1421414
PFAM domain coverage: 188 / 226 aa (83.2%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-118] | Trans_reg_C[152-224]
- Domain count: 2
- Matched identifier: RROC_1421414
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; Trans_reg_C 152-224 ; Trans_reg_C 152-224
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS09840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key