1 Response_reg#1
4-117 aa · 114 aa · 47.3% of protein
Raw token
Response_reg:4:5.7e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS08470
Response regulator, unclassified
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeunclassifiedLength241 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003474415#DW088_RS08470Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 241 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
146-187 aa · 42 aa · 17.4% of protein
Raw token
HTH_AraC:146:0.00000000604:187:42:423 HTH_AraC#3
200-237 aa · 38 aa · 15.8% of protein
Raw token
HTH_AraC:200:0.000000000306:237:38:42- Raw architecture: Response_reg:4:5.7e-28:117:114:111#HTH_AraC:146:0.00000000604:187:42:42#HTH_AraC:200:0.000000000306:237:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003474415::NZ_QUDG01000005.1::G00021
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span25339-30307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_08465RefSeq proteinWP_118360387.1
Context group ID
GCF_003474415::NZ_QUDG01000005.1::G00021Context members
DW088_RS08460DW088_RS08465DW088_RS08470
Partner locus tags
DW088_RS08460DW088_RS08465DW088_RS08470
Partner old locus tags
DW088_08455DW088_08460DW088_08465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360387.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS08470Primary locus identifier stored in the genes table.
Old locus tagDW088_08465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000005.1Sequence record reported by the local genomic context database.
Genomic interval29 582-30 307 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 339-30 307 ntGCF_003474415::NZ_QUDG01000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span25 339-30 307 nt4 969 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 339 nt30 307 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW088_RS08460GCF_003474415#DW088_RS08460
HKHybrid
25 339-27 909 nt · Forward (+)
DW088_RS08465GCF_003474415#DW088_RS08465
HKClassic
28 116-29 588 nt · Forward (+)
DW088_RS08470GCF_003474415#DW088_RS08470
RRunclassifiedCurrent focus
29 582-30 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS08470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867788
Simplified PFAM architecture for RROC_0867788
PFAM domain coverage: 191 / 241 aa (79.3%)
1 aa241 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[160-237]
- Domain count: 2
- Matched identifier: RROC_0867788
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 160-237 ; HTH_18 160-237
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS08470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key