1 HisKA#1
346-412 aa · 67 aa · 7.8% of protein
Raw token
HisKA:346:4.08e-17:412:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS08460
Histidine kinase, Hybrid
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeHybridLength856 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003474415#DW088_RS08460Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length856 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 856 aa (48.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa856 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
459-577 aa · 119 aa · 13.9% of protein
Raw token
HATPase_c:459:3.03e-29:577:119:1093 Response_reg#3
596-707 aa · 112 aa · 13.1% of protein
Raw token
Response_reg:596:3.61e-17:707:112:1114 Response_reg#4
735-851 aa · 117 aa · 13.7% of protein
Raw token
Response_reg:735:5.73e-34:851:117:111- Raw architecture: HisKA:346:4.08e-17:412:67:64#HATPase_c:459:3.03e-29:577:119:109#Response_reg:596:3.61e-17:707:112:111#Response_reg:735:5.73e-34:851:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003474415::NZ_QUDG01000005.1::G00021
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span25339-30307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_08455RefSeq proteinWP_243029842.1
Context group ID
GCF_003474415::NZ_QUDG01000005.1::G00021Context members
DW088_RS08460DW088_RS08465DW088_RS08470
Partner locus tags
DW088_RS08460DW088_RS08465DW088_RS08470
Partner old locus tags
DW088_08455DW088_08460DW088_08465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243029842.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS08460Primary locus identifier stored in the genes table.
Old locus tagDW088_08455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000005.1Sequence record reported by the local genomic context database.
Genomic interval25 339-27 909 nt2 571 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 339-30 307 ntGCF_003474415::NZ_QUDG01000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span25 339-30 307 nt4 969 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 339 nt30 307 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW088_RS08460GCF_003474415#DW088_RS08460
HKHybridCurrent focus
25 339-27 909 nt · Forward (+)
DW088_RS08465GCF_003474415#DW088_RS08465
HKClassic
28 116-29 588 nt · Forward (+)
DW088_RS08470GCF_003474415#DW088_RS08470
RRunclassified
29 582-30 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS08460The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0478810
Simplified PFAM architecture for HKOC_0478810
PFAM domain coverage: 414 / 856 aa (48.4%)
1 aa856 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[346-412] | HATPase_c[460-576] | Response_reg[596-709] | Response_reg[735-850]
- Domain count: 4
- Matched identifier: HKOC_0478810
- Positioned domains: HisKA 346-412 ; HATPase_c 460-576 ; Response_reg 596-709 ; Response_reg 735-850
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS08460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key