1 HisKA#1
475-541 aa · 67 aa · 6.8% of protein
Raw token
HisKA:475:6.81e-18:541:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS08425
Histidine kinase, Hybrid
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeHybridLength987 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS08425Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length987 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 987 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa987 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
589-705 aa · 117 aa · 11.9% of protein
Raw token
HATPase_c:589:3.24e-33:705:117:1093 Response_reg#3
725-838 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:725:7.88e-20:838:114:1114 Response_reg#4
866-983 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:866:5.49e-32:983:118:111- Raw architecture: HisKA:475:6.81e-18:541:67:64#HATPase_c:589:3.24e-33:705:117:109#Response_reg:725:7.88e-20:838:114:111#Response_reg:866:5.49e-32:983:118:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000005.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span12695-15658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_08420RefSeq proteinWP_118360380.1
Context group ID
GCF_003474415::NZ_QUDG01000005.1::G00019Context members
DW088_RS08425
Partner locus tags
DW088_RS08425
Partner old locus tags
DW088_08420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360380.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS08425Primary locus identifier stored in the genes table.
Old locus tagDW088_08420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000005.1Sequence record reported by the local genomic context database.
Genomic interval12 695-15 658 nt2 964 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 695-15 658 ntGCF_003474415::NZ_QUDG01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span12 695-15 658 nt2 964 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 695 nt15 658 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS08425GCF_003474415#DW088_RS08425
HKHybridCurrent focus
12 695-15 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS08425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0299243
Simplified PFAM architecture for HKOC_0299243
PFAM domain coverage: 414 / 987 aa (41.9%)
1 aa987 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[475-541] | HATPase_c[589-705] | Response_reg[725-837] | Response_reg[866-982]
- Domain count: 4
- Matched identifier: HKOC_0299243
- Positioned domains: HisKA 475-541 ; HATPase_c 589-705 ; Response_reg 725-837 ; Response_reg 866-982
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS08425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key