1 dCache_1#1
94-272 aa · 179 aa · 30.1% of protein
Raw token
dCache_1:94:0.00000000496:272:184:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS07585
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS07585Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage428 / 595 aa (71.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
292-360 aa · 69 aa · 11.6% of protein
Raw token
HAMP:292:0.0000201:360:71:693 His_kinase#3
375-449 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:375:2.12e-22:449:75:804 HATPase_c#4
471-575 aa · 105 aa · 17.6% of protein
Raw token
HATPase_c:471:0.0000000000000266:575:108:109- Raw architecture: dCache_1:94:0.00000000496:272:184:195#HAMP:292:0.0000201:360:71:69#His_kinase:375:2.12e-22:449:75:80#HATPase_c:471:0.0000000000000266:575:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000004.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46804-50026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_07580RefSeq proteinWP_118360273.1
Context group ID
GCF_003474415::NZ_QUDG01000004.1::G00017Context members
DW088_RS07585DW088_RS07590
Partner locus tags
DW088_RS07585DW088_RS07590
Partner old locus tags
DW088_07580DW088_07585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360273.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS07585Primary locus identifier stored in the genes table.
Old locus tagDW088_07580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000004.1Sequence record reported by the local genomic context database.
Genomic interval46 804-48 591 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 804-50 026 ntGCF_003474415::NZ_QUDG01000004.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000004.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span46 804-50 026 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 804 nt50 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS07585GCF_003474415#DW088_RS07585
HKClassicCurrent focus
46 804-48 591 nt · Forward (+)
DW088_RS07590GCF_003474415#DW088_RS07590
RRunclassified
48 572-50 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS07585The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081872
Simplified PFAM architecture for HKOC_1081872
PFAM domain coverage: 182 / 595 aa (30.6%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[376-452] | HATPase_c[471-575]
- Domain count: 2
- Matched identifier: HKOC_1081872
- Positioned domains: His_kinase 376-452 ; HATPase_c 471-575
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS07585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key