1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:1.35e-30:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS07520
Response regulator, unclassified
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS07520Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 530 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-472 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:431:0.00000000159:472:42:423 HTH_AraC#3
492-522 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:492:0.000000315:522:31:42- Raw architecture: Response_reg:4:1.35e-30:117:114:111#HTH_AraC:431:0.00000000159:472:42:42#HTH_AraC:492:0.000000315:522:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30080-33366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_07515RefSeq proteinWP_118360261.1
Context group ID
GCF_003474415::NZ_QUDG01000004.1::G00016Context members
DW088_RS07520DW088_RS07525
Partner locus tags
DW088_RS07520DW088_RS07525
Partner old locus tags
DW088_07515DW088_07520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360261.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS07520Primary locus identifier stored in the genes table.
Old locus tagDW088_07515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000004.1Sequence record reported by the local genomic context database.
Genomic interval30 080-31 672 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 080-33 366 ntGCF_003474415::NZ_QUDG01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span30 080-33 366 nt3 287 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 080 nt33 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS07520GCF_003474415#DW088_RS07520
RRunclassifiedCurrent focus
30 080-31 672 nt · Reverse (-)
DW088_RS07525GCF_003474415#DW088_RS07525
HKClassic
31 666-33 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS07520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111765
Simplified PFAM architecture for RROC_0111765
PFAM domain coverage: 193 / 530 aa (36.4%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[444-522]
- Domain count: 2
- Matched identifier: RROC_0111765
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 444-522 ; HTH_18 444-522
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS07520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key