1 sCache_like#1
39-136 aa · 98 aa · 17.9% of protein
Raw token
sCache_like:39:0.000000000389:136:110:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS05320
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength549 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS05320Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length549 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 549 aa (67.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa549 aa
Domain-by-domain annotation4 items
2 PAS_9#2
231-321 aa · 91 aa · 16.6% of protein
Raw token
PAS_9:231:0.0000699:321:103:1023 HisKA#3
328-394 aa · 67 aa · 12.2% of protein
Raw token
HisKA:328:3.27e-18:394:67:644 HATPase_c#4
438-549 aa · 112 aa · 20.4% of protein
Raw token
HATPase_c:438:2.3e-26:549:113:109- Raw architecture: sCache_like:39:0.000000000389:136:110:114#PAS_9:231:0.0000699:321:103:102#HisKA:328:3.27e-18:394:67:64#HATPase_c:438:2.3e-26:549:113:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span279866-282195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_05315RefSeq proteinWP_118360019.1
Context group ID
GCF_003474415::NZ_QUDG01000002.1::G00011Context members
DW088_RS05320DW088_RS05325
Partner locus tags
DW088_RS05320DW088_RS05325
Partner old locus tags
DW088_05315DW088_05320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360019.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS05320Primary locus identifier stored in the genes table.
Old locus tagDW088_05315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000002.1Sequence record reported by the local genomic context database.
Genomic interval279 866-281 515 nt1 650 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span279 866-282 195 ntGCF_003474415::NZ_QUDG01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span279 866-282 195 nt2 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
279 866 nt282 195 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS05320GCF_003474415#DW088_RS05320
HKClassicCurrent focus
279 866-281 515 nt · Reverse (-)
DW088_RS05325GCF_003474415#DW088_RS05325
RROmpR
281 512-282 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS05320The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1296111
Simplified PFAM architecture for HKOC_1296111
PFAM domain coverage: 250 / 549 aa (45.5%)
1 aa549 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[56-128] | HisKA[328-394] | HATPase_c[439-548]
- Domain count: 3
- Matched identifier: HKOC_1296111
- Positioned domains: sCache_like 56-128 ; HisKA 328-394 ; HATPase_c 439-548
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS05320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key