1 HisKA#1
339-403 aa · 65 aa · 11.8% of protein
Raw token
HisKA:339:2.22e-16:403:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS04605
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS04605Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 550 aa (30.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
446-547 aa · 102 aa · 18.5% of protein
Raw token
HATPase_c:446:4.14e-17:547:107:109- Raw architecture: HisKA:339:2.22e-16:403:65:64#HATPase_c:446:4.14e-17:547:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132991-135325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_04600RefSeq proteinWP_118359863.1
Context group ID
GCF_003474415::NZ_QUDG01000002.1::G00010Context members
DW088_RS04605DW088_RS04610
Partner locus tags
DW088_RS04605DW088_RS04610
Partner old locus tags
DW088_04600DW088_04605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118359863.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS04605Primary locus identifier stored in the genes table.
Old locus tagDW088_04600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000002.1Sequence record reported by the local genomic context database.
Genomic interval132 991-134 643 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 991-135 325 ntGCF_003474415::NZ_QUDG01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span132 991-135 325 nt2 335 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 991 nt135 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS04605GCF_003474415#DW088_RS04605
HKClassicCurrent focus
132 991-134 643 nt · Reverse (-)
DW088_RS04610GCF_003474415#DW088_RS04610
RROmpR
134 627-135 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS04605The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1293118
Simplified PFAM architecture for HKOC_1293118
PFAM domain coverage: 166 / 550 aa (30.2%)
1 aa550 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[339-403] | HATPase_c[447-547]
- Domain count: 2
- Matched identifier: HKOC_1293118
- Positioned domains: HisKA 339-403 ; HATPase_c 447-547
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS04605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key