1 dCache_1#1
112-262 aa · 151 aa · 25.5% of protein
Raw token
dCache_1:112:0.0000000000215:262:155:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS10865
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS10865Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage339 / 591 aa (57.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation3 items
2 His_kinase#2
362-441 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:362:5.02e-33:441:80:803 HATPase_c#3
457-564 aa · 108 aa · 18.3% of protein
Raw token
HATPase_c:457:2.15e-16:564:111:109- Raw architecture: dCache_1:112:0.0000000000215:262:155:195#His_kinase:362:5.02e-33:441:80:80#HATPase_c:457:2.15e-16:564:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78172-81636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_10870RefSeq proteinWP_117538087.1
Context group ID
GCF_003473885::NZ_QUCZ01000009.1::G00031Context members
DW152_RS10865DW152_RS10870
Partner locus tags
DW152_RS10865DW152_RS10870
Partner old locus tags
DW152_10870DW152_10875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117538087.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F041Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F041_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS10865Primary locus identifier stored in the genes table.
Old locus tagDW152_10870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000009.1Sequence record reported by the local genomic context database.
Genomic interval78 172-79 947 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 172-81 636 ntGCF_003473885::NZ_QUCZ01000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span78 172-81 636 nt3 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 172 nt81 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS10865GCF_003473885#DW152_RS10865
HKClassicCurrent focus
78 172-79 947 nt · Reverse (-)
DW152_RS10870GCF_003473885#DW152_RS10870
RRunclassified
80 035-81 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS09995Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1106393
Simplified PFAM architecture for HKOC_1106393
PFAM domain coverage: 415 / 591 aa (70.2%)
1 aa591 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[34-261] | His_kinase[362-441] | HATPase_c[458-564]
- Domain count: 3
- Matched identifier: HKOC_1106393
- Positioned domains: dCache_1 34-261 ; His_kinase 362-441 ; HATPase_c 458-564
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS09995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key