1 dCache_1#1
112-262 aa · 151 aa · 25.5% of protein
Raw token
dCache_1:112:0.0000000000215:262:155:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW125_RS09995
Histidine kinase, Classic
Dorea sp. AM10-31 · GCF_003435815
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435815#DW125_RS09995Stable P2CS identifier used across views.
GenomeGCF_003435815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage339 / 591 aa (57.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation3 items
2 His_kinase#2
362-441 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:362:5.02e-33:441:80:803 HATPase_c#3
457-564 aa · 108 aa · 18.3% of protein
Raw token
HATPase_c:457:2.15e-16:564:111:109- Raw architecture: dCache_1:112:0.0000000000215:262:155:195#His_kinase:362:5.02e-33:441:80:80#HATPase_c:457:2.15e-16:564:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435815::NZ_QTUV01000006.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73867-77331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW125_09990RefSeq proteinWP_117538087.1
Context group ID
GCF_003435815::NZ_QTUV01000006.1::G00032Context members
DW125_RS09990DW125_RS09995
Partner locus tags
DW125_RS09990DW125_RS09995
Partner old locus tags
DW125_09985DW125_09990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117538087.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F041Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F041_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW125_RS09995Primary locus identifier stored in the genes table.
Old locus tagDW125_09990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUV01000006.1Sequence record reported by the local genomic context database.
Genomic interval75 556-77 331 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 867-77 331 ntGCF_003435815::NZ_QTUV01000006.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435815::NZ_QTUV01000006.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span73 867-77 331 nt3 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 867 nt77 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW125_RS09990GCF_003435815#DW125_RS09990
RRunclassified
73 867-75 468 nt · Forward (+)
DW125_RS09995GCF_003435815#DW125_RS09995
HKClassicCurrent focus
75 556-77 331 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS09995The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1106393
Simplified PFAM architecture for HKOC_1106393
PFAM domain coverage: 415 / 591 aa (70.2%)
1 aa591 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[34-261] | His_kinase[362-441] | HATPase_c[458-564]
- Domain count: 3
- Matched identifier: HKOC_1106393
- Positioned domains: dCache_1 34-261 ; His_kinase 362-441 ; HATPase_c 458-564
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS09995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 098 · GCF_003435815
AssemblyASM343581v1 · Scaffoldhaploid
Genome composition2 920 802 bp · 41,0% GCDorea sp. AM10-31
Signal transduction countsGenes 62 · HK 32 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key